Building Life Forms From Scratch

caltrek

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Report this Aug. 22 2009, 10:05 am

"Scientists say they have reached an important milestone in a quest to build a life-form from scratch. They have synthesized a bacterium's entire chromosome from its chemical building blocks.

Soon, they hope to activate those genes and create living, multiplying bacteria. Eventually, synthetic organisms may help produce fuels, chemicals and medicines.

This effort is part of a whole new field that's starting up, called synthetic biology. The idea is to take biotechnology to the next level, not just by moving genes around, but by building biological machinery from scratch.

Scientists have already assembled virus genomes from chemical building blocks. Now they're on to bacteria.

A research team at the J. Craig Venter Institute outside Washington, D.C., has set its sights on a bacterium called Mycoplasma genitalium.

This simple organism has just a few hundred genes to begin with, and a complete genetic code that's about half a million letters long ? more than a thousand times smaller than a human's.

Venter says the idea was to synthesize this genome by assembling those half-million letters in gene-making machines.

'This entire process started with four bottles of chemicals, containing what's represented by A, C, T and G,' he said, referring to the chemical building blocks of DNA.

Gene machines churned out 101 relatively small snippets of DNA, each representing about 1 percent of the genetic code of this bacterium.

Venter's colleagues then put those snippets in bacteria, which multiplied like crazy and served as a copy machine for those pieces.

Then gradually, using bacteria and finally yeast cells, they stitched together those 101 pieces in the correct order. They then read back the genetic code to make sure they had made a true copy of the natural chromosome.

They reported that success Thursday in the online edition of Science magazine.

But there's a big hurdle ahead. They have not yet been able to put this chromosome into a cell and get the cell to use that genetic information to start functioning and reproducing.

'There are multiple barriers for this,' Venter said. 'It's not just a slam dunk or we would be announcing it today'"

But his lab has some ideas about how to do this. Venter says he would be surprised and disappointed if he can't succeed sometime this year.

Venter has quite an impressive track record in science. Most famously, he was instrumental in the effort to sequence the human genome.

Eventually, Venter wants to use this method to create radical new versions of this bacterium, so he can ultimately understand how its genes all work. If the Venter lab can do that, they can then start to build radically different organisms from the ground up.

'We could enter into a new design phase of biology, by actually constructing chromosomes of a more specific nature for a more specific purpose,' he said in a telephone news briefing.

Venter's lab, like others, is focusing now on 'designer bacteria' that can help combat global warming, by creating more environmentally friendly fuels from plant material.

George Church, at Harvard Medical School, is also interested in engineering bacteria that can do this. But he's not convinced you need to build them from scratch.

'In fact, most of the proposals on the table involve somewhere less than a hundred changes' in a bacteria's genes, he said. And individual changes to the bacteria's genes are not too tough.

Church sees a great deal of potential in synthetic biology. But he says that technologies also have risks, so we need to be sure this one doesn't end up being used for nefarious purposes, such as engineering more deadly viruses."

NPR

Kind of gives a whole new spin to the idea of "intelligent design" doesn't it?

Also, it is kind of ironic that the main agent for recent mass extinctions may turn right around and create whole new species. Of course, I preferred the elegance, complexity, and beauty of the species that were here before they became extinct to the tiny critters talked about in the article.

draeden06

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Report this Aug. 22 2009, 5:33 pm

Could we engineer a type of bacterial aeroplankton to stay alot in our atmosphere and absorb CO2?

norwegian

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Report this Aug. 23 2009, 4:33 pm

If we could, lets test it out on Venus first.  Get rid of some of their greenhouse gasses.

dryson

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Report this Aug. 29 2009, 1:45 am

Interesting article Norwegian, I wonder if it would be possible to synthetically create a bacteria that could be inserted into an environment like Mars where the bacteria would feed off of the oxygen that is contained within the frozen or liquid ice? Although I am quite certain that the main ingrediant would be that the bacteria would need to feed off of the metallic particles that are oxidizing instead of the actuall oxygen molecules theirself, it would be interesting to see the results.

dryson

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Report this Aug. 29 2009, 1:48 am

It would be interesting to see what  caused the very first proteins to intertwine to begin the DNA strand. One has to ask are these proteins actually smaller bacteria that join together in order to create a better survival rate? If so then what type of thinking process' might be involved with the combining of the first two proteins?

caltrek

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Report this Sep. 13 2009, 7:14 pm

Yes, the prospect of terra forming other planets in our solar system is very exciting. Learning how to manufacture organisms from scratch would certainly come in handy in that endeavor. One could write a lot of science fiction stories about things that could go wrong in such scenarios - new and deadly life forms developing that "escape" back to earth, etc.

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